Abstract
The capacity of coral reefs to provide ecosystem services is directly related to their three-dimensional structural complexity. This parameter is also correlated with total fish biomass, reef resilience to external stresses and the dissipation of wave energy. However, information on structural complexity (i.e., reef rugosity) has not always been assessed in historical monitoring programs, and long-term trends are sometimes unavailable. In this study, we show that it is possible to predict and hindcast the three-dimensional complexity of coral reefs by combining photogrammetry, statistical modeling and historical benthic community data. We calibrated lasso generalized linear models and boosted regression trees to predict structural complexity from photogrammetry transects around Moorea (French Polynesia). Our models were able to predict structural complexity with high accuracy (cross-validated R2 ranges between 0.81 and 0.9). We then used our models to hindcast historical trends in 3D structural complexity using community composition data collected in Moorea from 2004 to 2017. The temporal analysis highlighted the severe impact of a crown-of-thorns (COTS) outbreak from 2006 to 2009 and Cyclone Oli in 2010. In conjunction, these two events reduce coral cover from ~ 50% to almost zero. While the collection of actual data is always to be preferred, our model captured these effects, confirming the capacity of this modeling technique to predict structural complexity on the basis of assemblage composition.
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References
Adjeroud M, Vercelloni J, Bosserelle P, Chancerelle Y, Kayal M, Iborra-Cantonnet C, Penin L, Liao V, Claudet J (2018) Recovery of coral assemblages despite acute and recurrent disturbances on a South Central Pacific reef. Sci Rep 8:8
Alvarez-Filip L, Côté IM, Gill JA, Watkinson AR, Dulvy NK (2011) Region-wide temporal and spatial variation in Caribbean reef architecture: Is coral cover the whole story? Glob Chang Biol 17:2470–2477
Alvarez-Filip L, Dulvy NK, Gill JA, Côté IM, Watkinson AR (2009) Flattening of Caribbean coral reefs: Region-wide declines in architectural complexity. Proc R Soc B Biol Sci 276:3019–3025
Aronson RB, Precht WF (2006) Conservation, precaution, and Caribbean reefs. Coral Reefs 25:441–450
Berumen ML, Pratchett MS (2006) Recovery without resilience: Persistent disturbance and long-term shifts in the structure of fish and coral communities at Tiahura Reef, Moorea. Coral Reefs 25:647–653
Bryson M, Ferrari R, Figueira W, Pizarro O, Madin J, Williams S, Byrne M (2017) Characterization of measurement errors using structure-motion and photogrammetry to measure marine habitat structural complexity. Ecol Evol 7:5669–5681
Burns J, Delparte D, Gates R, Takabayashi M (2015) Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs. PeerJ 3:19
Carroll A, Harrison P, Adjeroud M (2006) Sexual reproduction of Acropora reef corals at Moorea, French Polynesia. Coral Reefs 25:93–97
Casella E, Collin A, Harris D, Ferse S, Bejarano S, Parravicini V, Hench JL, Rovere A (2017) Mapping coral reefs using consumer-grade drones and structure from motion photogrammetry techniques. Coral Reefs 36:269–275
Chazdon RL (2014) Second Growth, the promise of tropical forest regeneration in an age of deforestation
Chazottes V, Le Campion-Alsumard T, Peyrot-Clausade M (1995) Bioerosion rates on coral reefs : interactions between macroborers, * Experimental site. Palaeogeogr Palaeoclimatol Palaeoecol 113:189–198
Done TJ, Devantier LM, Turak E, Fisk DA, Wakeford M, Van Woesik R (2010) Coral growth on three reefs : development of recovery benchmarks using a space for time approach. Coral Reefs 29:815–833
Elith J, Leathwick JR, Hastie T (2008) A working guide to boosted regression trees. J Anim Ecol 77:802–813
Figueira W, Ferrari R, Weatherby E, Porter A, Hawes S, Byrne M (2015) Accuracy and Precision of Habitat Structural Complexity Metrics Derived from Underwater Photogrammetry. Remote Sens 7:16883–16900
Friedman A, Pizarro O, Williams SB, Johnson-Roberson M (2012) Multi-Scale Measures of Rugosity, Slope and Aspect from Benthic Stereo Image Reconstructions. PLoS One 7:14
Graham NAJ, Nash KL (2013) The importance of structural complexity in coral reef ecosystems. Coral Reefs 32:315–326
Graham NAJ, Jennings S, MacNeil MA, Mouillot D, Wilson SK (2015) Predicting climate-driven regime shifts versus rebound potential in coral reefs. Nature 518:7
Gratwicke B, Speight MR (2005) Effects of habitat complexity on Caribbean marine fish assemblages. Mar Ecol Prog Ser 292:301–310
Halford A, Cheal AJ, Ryan D, Williams DM (2004) Resilience to Large-Scale Disturbance in Coral and Fish Assemblages on the Great Barrier Reef. Ecol Soc Am 85:1892–1905
Harris DL, Pomeroy A, Power H, Casella E, Rovere A, Webster JM, Parravicini V, Canavesio R, Collin A (2018) Coral reef structural complexity provides important coastal protection from waves under rising sea levels. Sci Adv 4:7
Harwin S, Lucieer A, Osborn J (2015) The Impact of the Calibration Method on the Accuracy of Point Clouds Derived Using Unmanned Aerial Vehicle Multi-View Stereopsis. Remote Sens 7:11933–11953
Heron SF, Maynard JA, Van Hooidonk R, Eakin CM (2016) Warming Trends and Bleaching Stress of the World’s Coral Reefs 1985-2012. Sci Rep 6:14
Hill J, Wilkinson C (2004) Methods for ecological monitoring of coral reefs: A resource for managers. Version 1. Aust Inst Mar Sci
Hobson RD (1972) Surface roughness in topography: quantitative approach. In: Chorley RJ (ed) Spatial Analysis in Geomorphology. Methuen, London, pp 221–245
Hoegh-Guldberg O (1999) Climate Change, coral bleaching and the future of the world’ s coral reefs. Mar Freshw Res 50:839–866
Hoegh-Guldberg O, Mumby PJ, Hooten AJ, Steneck RS, Greenfield P, Gomez E, Harvell CD, Sale PF, Edwards AJ, Caldeira K, Knowlton N, Eakin CM, Iglesias-Prieto R, Muthiga N, Bradbury RH, Dubi A, Hatziolos ME (2007) Coral reefs under rapid climate change and ocean acidification. Science (80-) 318:1737–1742
Hughes TP, Álvarez-Noriega M, Álvarez-Nomero JG, Anderson KD, Baird AH, Babcock RC, Beger M, Bellwood DR, Berkelmans R, Bridge TC, Butler IR, Byrne M, Cantin NE, Comeau S, Connolly SR, Cumming GS, Dalton SJ, Kerry JT, Kuo C, Lough JM, Hoey AS, Hobbs JA, Hoogenboom MO, Emma V, Pears RJ, Pratchett MS, Schoepf V, Simpson T, Skirving WJ, Sommer B (2017) Global warming and recurrent mass bleaching of corals. Nature 543:373–377
Hughes TP, Anderson KD, Connolly SR, Heron SF, Kerry JT, Lough JM, Baird AH, Baum JK, Berumen ML, Bridge TC, Claar DC, Eakin CM, Gilmour JP, Graham NAJ, Harrison H, Hobbs JA, Hoey AS, Hoogenboom M, Lowe RJ, Mcculloch MT, Pandolfi JM, Pratchett M, Schoepf V (2018) Spatial and temporal patterns of mass bleaching of corals in the Anthropocene. Science (80-) 83:80–83
Hughes TP, Baird AH, Bellwood DR, Card M, Connolly SR, Folke C, Grosberg R, O H-G, Jackson JBC, Kleypas J, Lough JM, Marshall P, Nyström M, Palumbi SR, Pandolfi JM, Rosen B, Roughgarden J (2003) Climate Change, Human Impacts, and the Resilience of Coral Reefs. Science (80-) 301:929–933
Kappes H, Sundermann A, Haase P (2010) High spatial variability biases the space-for-time approach in environmental monitoring. Ecol Indic 10:1202–1205
Kayal M, Vercelloni J, Lison de Loma T, Bosserelle P, Chancerelle Y, Geoffroy S, Stievenart C, Michonneau F, Penin L, Planes S, Adjeroud M (2012) Predator Crown-of-Thorns Starfish (Acanthaster planci) Outbreak, Mass Mortality of Corals, and Cascading Effects on Reef Fish and Benthic Communities. PLoS One 7
Kohler KE, Gill SM (2006) Coral Point Count with Excel extensions (CPCe): A Visual Basic program for the determination of coral and substrate coverage using random point count methodology. Comput Geosci 32:1259–1269
Lamy T, Galzin R, Kulbicki M, Lison de Loma T, Claudet J (2016) Three decades of recurrent declines and recoveries in corals belie ongoing change in fish assemblages. Coral Reefs 35:293–302
Lavy A, Eyal G, Neal B, Keren R, Loya Y, Ilan M (2015) A quick, easy and non-intrusive method for underwater volume and surface area evaluation of benthic organisms by 3D computer modelling. Methods Ecol Evol 6:521–531
Leichter JJ, Alldredge AL, Bernardi G, Brooks AJ, Carlson CA, Carpenter RC, Edmunds J, Fewings MR, Hanson KM, Hench JL, Holbrook J, Nelson GE, Schmitt RJ, Toonen RJ, Washburn L, Wyatt SJ (2013) Biological and physical interactons on a tropical island coral reef: transport, and retention processes on Moorea, French Polynesia. Oceanography 26:52–63
Leon JX, Roelfsema CM, Saunders MI, Phinn SR (2015) Measuring coral reef terrain roughness using “Structure-from-Motion” close-range photogrammetry. Geomorphology 242:21–28
MacArthur RH, Wilson EO (1967) The Theory of Island Biogeography
Mcclanahan TR, Graham NAJ (2005) Recovery trajectories of coral reef fish assemblages within Kenyan marine protected areas. Mar Ecol Prog Ser 294:241–248
McCormick MI (1994) Comparison of field methods for measuring surface tomography and their associations with a tropical reef fish assemblage. Mar Ecol Prog Ser 112:87–96
Naughton P, Kastner R, Sandin S, Kuester F, Edwards C, Petrovic V (2015) Scaling the Annotation of Subtidal Marine Habitats. Proc 10th Int Conf Underw Networks Syst 1–5
Newman SP, Meesters EH, Dryden CS, Williams SM, Sanchez C, Mumby PJ, Polunin NVC (2015) Reef flattening effects on total richness and species responses in the Caribbean. J Anim Ecol 84:1678–1689
Parravicini V, Kulbicki M, Bellwood DR, Friedlander AM, Chabanet P, Floeter SR, Myers R, Vigliola L, Agata SD, Mouillot D (2013) Global patterns and predictors of tropical reef fish species richness. Ecography (Cop) 36:1254–1262
Parravicini V, Rovere A, Donato M, Morri C, Bianchi CN (2006) A method to measure three-dimensional substratum rugosity for ecological studies: an example from the date-mussel fishery desertification in the north-western Mediterranean. J Mar Biol Assoc United Kingdom 86:689–690
Perry CT, Alvarez-Filip L, Graham NAJ, Mumby PJ, Wilson SK, Kench PS, Manzello DP, Morgan KM, Slangen ABA, Thomson DP, Januchowski-Hartley F, Smithers SG, Steneck RS, Carlton R, Edinger EN, Enochs IC, Estrada-Saldívar N, Haywood MDE, Kolodziej G, Murphy GN, Pérez-Cervantes E, Suchley A, Valentino L, Boenish R, Wilson M, Macdonald C (2018) Loss of coral reef growth capacity to track future increases in sea level. Nature 558:396–400
Pickett STA (1989) Space-for-time substitution as an alternative to long-term studies. Long-term studies in ecology. pp 110–135
R Core Team (2019) R: a language and environment for statistical computing
Richardson LE, Graham NAJ, Hoey AS (2017) Cross-scale habitat structure driven by coral species composition on tropical reefs. Sci Rep 7:11
Risk MJ (1972) Fish diversity on a coral reef in the Virgin Islands. Atoll Res Bull 153:1–4
Rogers A, Blanchard JL, Mumby PJ (2014) Vulnerability of coral reef fisheries to a loss of structural complexity. Curr Biol 24:1000–1005
Storlazzi CD, Dartnell P, Hatcher GA, Gibbs AE (2016) End of the chain? Rugosity and fine-scale bathymetry from existing underwater digital imagery using structure-from-motion (SfM) technology. Coral Reefs 35:889–894
Ullman S (1979) The interpretation of structure from motion. Proc R Soc Lond B Biol Sci 203:405–426
Van den Boogaart KG, Tolosana-Delgado R (2013) Analyzing compositional data with R. Anal Compos Data with R 1–258
Van Oppen MJH, Lough JM (2009) Coral Bleaching Patterns. Processes, Causes and Consequences
Van Woesik R, Sakai K, Ganase A, Loya Y (2011) Revisiting the winners and the losers a decade after coral bleaching. Mar Ecol Prog Ser 434:67–76
Westoby MJ, Brasington J, Glasser NF, Hambrey MJ, Reynolds JM (2012) “Structure-from-Motion” photogrammetry: A low-cost, effective tool for geoscience applications. Geomorphology 179:300–314
Willis TJ, Anderson MJ (2003) Structure of cryptic reef fish assemblages: relationships with habitat characteristics and predator density. Mar Ecol Prog Ser 257:209–221
Acknowledgements
We thank Jordan Casey for constructive comments and assistance with writing. This research was supported by grants Reef Services and RisqueRecif from the BNP Foundation and French Polynesian government. VP is supported by the Institut Universitaire de France.
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Carlot, J., Rovère, A., Casella, E. et al. Community composition predicts photogrammetry-based structural complexity on coral reefs. Coral Reefs 39, 967–975 (2020). https://doi.org/10.1007/s00338-020-01916-8
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DOI: https://doi.org/10.1007/s00338-020-01916-8