Abstract
We introduce a new class of interacting Markov chain Monte Carlo (MCMC) algorithms which is designed to increase the efficiency of a modified multiple-try Metropolis (MTM) sampler. The extension with respect to the existing MCMC literature is twofold. First, the sampler proposed extends the basic MTM algorithm by allowing for different proposal distributions in the multiple-try generation step. Second, we exploit the different proposal distributions to naturally introduce an interacting MTM mechanism (IMTM) that expands the class of population Monte Carlo methods and builds connections with the rapidly expanding world of adaptive MCMC. We show the validity of the algorithm and discuss the choice of the selection weights and of the different proposals. The numerical studies show that the interaction mechanism allows the IMTM to efficiently explore the state space leading to higher efficiency than other competing algorithms.
Similar content being viewed by others
References
Atchadé, Y., Roberts, G.O., Rosenthal, J.S.: Towards optimal scaling of Metropolis-coupled Markov chain Monte Carlo. Stat. Comput. 21, 555–568 (2011)
Barrett, M., Galipeau, P., Sanchez, C., Emond, M., Reid, B.: Determination of the frequency of loss of heterozygosity in esophageal adenocarcinoma nu cell sorting, whole genome amplification and microsatellite polymorphisms. Oncogene 12 (1996)
Bédard, M., Douc, R., Moulines, E.: Scaling analysis of multiple-try MCMC methods. Technical report, Université de Montréal (2010)
Campillo, F., Rakotozafy, R., Rossi, V.: Parallel and interacting Markov chain Monte Carlo algorithm. Math. Comput. Simul. 79, 3424–3433 (2009)
Cappé, O., Gullin, A., Marin, J., Robert, C.P.: Population Monte Carlo. J. Comput. Graph. Stat. 13, 907–927 (2004)
Casarin, R., Marin, J.-M.: Online data processing: Comparison of Bayesian regularized particle filters. Electron. J. Stat. 3, 239–258 (2009)
Casarin, R., Marin, J.-M., Robert, C.: A discussion on: approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations by Rue, H., Martino, S. and Chopin, N. J. R. Stat. Soc. B 71, 360–362 (2009)
Celeux, G., Marin, J.-M., Robert, C.: Iterated importance sampling in missing data problems. Comput. Stat. Data Anal. 50, 3386–3404 (2006)
Chauveau, D., Vandekerkhove, P.: Improving convergence of the Hastings-Metropolis algorithm with an adaptive proposal. Scand. J. Stat. 29, 13 (2002)
Craiu, R.V., Lemieux, C.: Acceleration of the multiple-try Metropolis algorithm using antithetic and stratified sampling. Stat. Comput. 17, 109–120 (2007)
Craiu, R.V., Meng, X.L.: Multi-process parallel antithetic coupling for forward and backward MCMC. Ann. Stat. 33, 661–697 (2005)
Craiu, R.V., Rosenthal, J.S., Yang, C.: Learn from thy neighbor: parallel-chain adaptive and regional MCMC. J. Am. Stat. Assoc. 104, 1454–1466 (2009)
Del Moral, P.: Feynman-Kac Formulae. Genealogical and Interacting Particle Systems with Applications. Springer, Berlin (2004)
Del Moral, P., Doucet, A., Jasra, A.: Sequential Monte Carlo samplers. J. R. Stat. Soc. B 68, 411–436 (2006)
Desai, M.: Mixture models for genetic changes in cancer cells. Ph.D. thesis, University of Washington (2000)
Früwirth-Schnatter, S.: Finite Mixture and Markov Switching Models. Springer, Berlin (2006)
Gelman, A., Rubin, D.B.: Inference from iterative simulation using multiple sequences (with discussion). Stat. Sci. 457–511 (1992)
Geyer, C.J., Thompson, E.A.: Annealing Markov chain Monte Carlo with applications to ancestral inference. Tech. rep. 589, University of Minnesota (1994)
Hastings, W.K.: Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57, 97–109 (1970)
Heard, N.A., Holmes, C., Stephens, D.: A quantitative study of gene regulation involved in the immune response od anophelinemosquitoes: an application of Bayesian hierarchical clustering of curves. J. Am. Stat. Assoc. 101, 18–29 (2006)
Jasra, A., Stephens, D.A., Holmes, C.: Markov chain Monte Carlo methods and the label switching problem in Bayesian mixture modelling. Stat. Sci. 20, 50–67 (2005)
Jasra, A., Stephens, D., Holmes, C.: On population-based simulation for static inference. Stat. Comput. 17, 263–279 (2007)
Jennison, C.: Discussion of Bayesian computation via the Gibbs sampler and related Markov chain Monte Carlo methods, by A.F.M. Smith and G.O. Roberts. J. R. Stat. Soc. B 55, 54–56 (1993)
Liu, J., Liang, F., Wong, W.: The multiple-try method and local optimization in Metropolis sampling. J. Am. Stat. Assoc. 95, 121–134 (2000)
Liang, F., Wong, W.: Real parameter evolutionary Monte Carlo with applications to Bayesian mixture models. J. Am. Stat. Assoc. 96, 653–666 (2001)
Marinari, E., Parisi, G.: Simulated tempering: a new Monte Carlo scheme. Europhys. Lett. 19, 451–458 (1992)
Mengersen, K., Robert, C.: The pinball sampler. In: Bernardo, J., Dawid, A., Berger, J., West, M. (eds.) Bayesian Statistics 7. Springer, Berlin (2003)
Metropolis, N., Rosenbluth, A., Rosenbluth, M., Teller, A., Teller, E.: Equations of state calculations by fast computing machines. J. Chem. Phys. 21, 1087–1092 (1953)
Neal, R.M.: Sampling from multimodal distributions using tempered transitions. Tech. rep. 9421, University of Toronto (1994)
Pandolfi, S., Bartolucci, F., Friel, N.: A generalization of the multiple-try Metropolis algorithm for Bayesian estimation and model selection. In: Proceedings of the 13th International Conference on Artificial Intelligence and Statistics (AISTATS), Chia Laguna Resort, Sardinia, Italy, pp. 581–588 (2010a)
Pandolfi, S., Bartolucci, F., Friel, N.: A generalized Multiple-try Metropolis version of the Reversible Jump algorithm. Tech. rep. (2010b). http://arxiv.org/pdf/1006.0621
Pritchard, J.K., Stephens, M., Donnelly, P.: Inference of population structure using multilocus genotype data. Genetics 155, 945–959 (2000)
Richardson, S., Green, P.J.: On Bayesian analysis of mixtures with an unknown number of components (with discussion). J. R. Stat. Soc. B 4(59), 731–792 (1997)
Shephard, N., Pitt, M.: Likelihood analysis of non-Gaussian measurement time series. Biometrika 84, 653–667 (1997)
So, M.K.P.: Bayesian analysis of nonlinear and non-Gaussian state space models via multiple-try sampling methods. Stat. Comput. 16, 125–141 (2006)
Taylor, S.: Modelling stochastic volatility. Math. Finance 4, 183–204 (1994)
Warnes, G.: The Normal kernel coupler: an adaptive Markov chain Monte Carlo method for efficiently sampling from multi-modal distributions. Technical report, George Washington University (2001)
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Casarin, R., Craiu, R. & Leisen, F. Interacting multiple try algorithms with different proposal distributions. Stat Comput 23, 185–200 (2013). https://doi.org/10.1007/s11222-011-9301-9
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11222-011-9301-9